Cell adhesion of Shewanella oneidensisto iron oxide minerals: Effect of different single crystal faces
© American Institute of Physics 2005
Received: 25 July 2005
Accepted: 22 November 2005
Published: 30 December 2005
The results of experiments designed to test the hypothesis that near-surface molecular structure of iron oxide minerals influences adhesion of dissimilatory iron reducing bacteria are presented. These experiments involved the measurement, using atomic force microscopy, of interaction forces generated between Shewanella oneidensis MR-1 cells and single crystal growth faces of iron oxide minerals. Significantly different adhesive force was measured between cells and the (001) face of hematite, and the (100) and (111) faces of magnetite. A role for electrostatic interactions is apparent. The trend in relative forces of adhesion generated at the mineral surfaces is in agreement with predicted ferric site densities published previously. These results suggest that near-surface structure does indeed influence initial cell attachment to iron oxide surfaces; whether this is mediated via specific cell surface-mineral surface interactions or by more general interfacial phenomena remains untested.
Sufficient energy is available from the reduction of ferric iron in both crystalline and noncrystalline iron oxides to support the growth of dissimilatory metal reducing bacteria where ferric iron is the dominant electron acceptor. It is now clear that the relative reactivity of various oxide phases in both terrestrial and marine sediments is controlled less by thermodynamic considerations than the surface area of the respective phases. [1, 3, 4] In instances where direct cell-mineral contact is necessary for bacterial iron reduction, [5–7] mineral surface area controls not only the availability of reactive sites but also of cell attachment sites. Ferrous iron may significantly limit bioreduction by occluding reactive sites thereby controlling the observed reactivity. It has been recently demonstrated that when mineral surface area is controlled by presenting cells with single crystal growth faces, differences in cell accumulation of the dissimilatory iron reducing bacterium Shewanella oneidensis MR-1 are observed between three iron oxide faces which moreover appear consistent with modeled rates of electron transfer from an outer membrane cytochrome. Thus, fine scale interactions reflecting the atomic or electronic structure of Fe-oxide bulk and near-surface regions also have the potential to affect biological activity/reduction.
At present we have only a very general understanding of how dissimilatory iron reducing bacteria (DIRB) attach to iron oxide surfaces: hydrophobic interactions are implicated in the adhesion of Shewanella algae BrY to iron oxides, this hydrophobicity may be expressed via a proteinaceous component since cell adhesion is interrupted by proteases. In this sense, adhesion of DIRB is similar to adhesion of a wide variety of bacteria to inanimate surfaces. [13–15] However, since DIRB are reliant upon electron transfer to iron oxide surfaces when growing anaerobically, there exists the potential for specific adhesion.
Here we describe force measurements, made using atomic force microscopy (AFM) and S. oneidensis MR-1 cells immobilized onto tip-less silicon nitride cantilever apices, to a series of flat single crystal iron oxide faces. In a series of similar experiments using a variety of bacterial cells, including S. oneidensis, Lower and colleagues have sought to improve the technique of immobilizing cells at a cantilever surface so that they are not only alive, but also limited in number, allowing more reliable measurements to be performed. [16–18] Their approach was to immobilize cells employing either poly(L-lysine) treated glass beads, subsequently attached to the cantilever with epoxy resin, or to attach individual cells to cantilever surfaces previously treated either with poly(L-lysine) or amine functionalized with an aminosilane. The surface pretreatment promotes cell adhesion to the glass-cantilever surface. Using these approaches, Lower and colleagues established two paradigms describing the interaction of DIRB with mineral surfaces: based upon increased forces of adhesion measured on goethite surfaces compared to diaspore, they established that specific interactions are elicited between DIRB and iron oxide surfaces; second, they interpreted retraction curves collected on goethite displaying "sawtoothlike discontinuities" as bond failure events, indicative of specific interactions between the iron oxide surface and outer membrane associated cytochromes. This interaction was successfully modeled using a wormlike chain model to mimic successive bond failure between the outer membrane associated protein and the mineral surface.
The use of single crystal surfaces minimises differences in surface area between the three faces limiting possible effects of surface topography which can significantly affect forces of bacterial adhesion to surfaces.[19, 20] The surfaces we employed have limited surface roughness as determined by AFM (< 1 nm rms). We demonstrate that the adhesion forces measured at the three faces are significantly different and support previous observations that hematite presents a more optimal surface for cell activity than magnetite surfaces. The data suggests that electrostatic interactions are potential determinants of cell adhesion and need to be considered along with rates of electron transfer when considering the relative reactivities of different iron oxides towards dissimilatory iron reduction.
Materials and Methods
Iron oxide minerals
Natural, single crystal growth faces of iron oxide minerals were used in these experiments (surfaces are described in Ref. 10). Hematite (001) faces were isolated on specular, tabular hematite from Brazil acquired from the Stanford Mineralogical Collection (sample 51080). Magnetite (100) faces were isolated on tetrahexahedra from New York, acquired from the Harvard Mineralogical Collection (sample 134816). Magnetite (111) faces were isolated on octahedra from Vermont, again from the Harvard Mineralogical Collection (sample 184.108.40.206). We used natural crystal growth faces for this study. Samples were previously determined by low resolution x-ray photoelectron spectroscopy (XPS) to be free of surface contaminants, within the sensitivity limits of XPS, however, surfaces were not cleaned other than by rinsing in distilled deionized water to remove nonadherent material. The aim of this research was to determine cell-mineral interactions under near natural conditions. Since mineral surfaces are likely to be covered with adventitious carbon under natural conditions we made no attempt to subject the mineral surface to chemical treatment which might not only remove adventitious material but also significantly influence the near surface physicochemistry of the three mineral faces. Previously determined XPS iron-oxygen and divalent and/or trivalent iron ratios were consistent with the expected bulk stoichiometries of hematite and magnetite. We have thus assumed that any adventitious carbonaceous layers present are qualitatively similar across the three mineral faces and arise either from prior storage of the surfaces or from exposure to the PIPES-buffered medium in which AFM measurements were performed. Atomic force microscopy (AFM) was used to assess surface topography (see Ref. 10). Surfaces used possessed a mean square roughness of ≤ 1 nm over lateral areas of several square microns and were optically flat and "mirrorlike."
Shewanella oneidensis MR-1 was cultured anaerobically in a defined salt medium (SM). Besides 32 mM lactate which serves both as a carbon source and electron donor, SM contains 32 mM PIPES buffer, 9 mM ammonium sulphate, 6 mM K2HPO4, 3.3 mM KH2PO4, 2 mM NaHCO3, 1 mM MgSO4, 0.5 mM CaCl2, 67.2 μM Na2-EDTA, 56.6 μM H3BO3, 10 μM NaCl, 5.4 μM FeSO4, 5 μM CoSO4, 5 μM Ni(NH4)2SO4, 3.9 μM Na2MoO4, 1.5 μM Na2SeO4, 1.3 μM MnSO4, 0.2 μM CuSO4, 20 mg L-1 each of arginine, serine and glutamic acid. Cells were grown anaerobically for 24 hours in batch culture with 32 mM fumerate as electron acceptor. We chose an organic terminal electron acceptor to prevent the formation of metal precipitates on the cell surface (likely to form with either Fe3+- or Mn4+-containing electron acceptors) which would preclude the study of true cell-surface, mineral-surface interactions. However, since phenotypic differences are well documented for cells grown under different electron acceptor availabilities, fumerate was chosen instead of other organic electron acceptors (i.e., O2 or NO3) since, when compared to cells grown on Fe3+ as terminal electron acceptor, cells grown on fumerate are phenotypically less distinct than cells grown on either O2 or NO3. All cells were cultured in anaerobic flasks using butyl rubber septa and aluminium crimp caps (Wheaton, Millville, NJ). Cells were harvested by centrifugation under a 95% N2:5%H2 atmosphere and washed in an anaerobic basal medium lacking both lactate and fumerate. Cells were washed three times and resuspended in a final volume of 1 ml in anaerobic basal medium.
Immobilization of cells onto cantilever apices
Atomic force microscopy measurements
AFM experiments were conducted in contact mode using a Nanoscope IIIa multimode SPM (Digital Instruments, Santa Barbara, CA) at room temperature. The AFM measurements were performed in a fluid cell containing anaerobic PIPES buffer-based medium (32 mM) comparable to that used in previous growth experiments except lacking in a carbon source (lactate). The pH of the solution was thereby maintained at 7. Under these conditions MR-1 cells have a zeta (ζ) potential of -5.7 ± 0.5 mV (Zetasizer 3000HS A , Malvern Instruments, Malvern, UK).
Data processing and analysis
Each collected force curve was analyzed separately. Those curves displaying significant noise due to the presence of gas bubbles in the liquid cell (evident as large plateaus), interference between light reflected from the cantilever and mineral surfaces (evident as periodic oscillations), or a steep positive or negative slope in the region of no contact were removed from the data set. The number of force curves collected on each mineral face ranged from 502 on Magnetite (100) to 901 on Magnetite (111), collected with a total of three cantilevers. Force data were collected as photodiode counts versus piezo displacement and converted to force versus cell-surface separation distance[24, 25] using an IGOR-Pro 4.04 (WaveMetrics Inc., Lake Oswego, OR) routine, AFM 4.4 developed by Kendall and Hochella. This routine generates parameters for the forces of adhesion and repulsion (expressed in nN) as well as jump-to-contact and jump-from-contact distances (expressed in nm). The combined data sets were first analyzed collectively with a multiple analysis of variance (MANOVA). The effects of the different surfaces upon force curve parameters were subsequently analyzed by individual two-factor analysis of variance (ANOVA) using individual cantilevers and surfaces as factors. A priori, only those differences between crystal faces were of direct interest to the present study since it has previously been demonstrated that differences in adhesive properties even between clones of a single cell are to be expected.[27, 28] Therefore, in the case where a significant difference in force curve parameters was indicated by ANOVA (α = 95 %), Bonferroni pairwise comparisons were performed between the three surfaces.
Average force distance curves collected on approach to and retraction from the three mineral faces with APTES-functionalized tipless cantilevers are shown in Fig. 2. Here we follow convention by ascribing positive signs to repulsive forces and negative signs to attractive forces. Little repulsive force was measured for APTES-functionalized cantilevers to which no cells were attached. Approach force-distance curves indicate little interaction between the APTES-treated cantilevers and the three mineral faces and that what interactions are observed occur only within separation distances of less than 20 nm (cf. immobilized cells below). Large forces of adhesion were observed upon retraction and are likely a function of the large amount of reactive surface area available on a tipless cantilever with no attached cell. Greatest forces (mean ± 95% confidence interval of the mean) were measured between APTES-functionalized cantilevers and magnetite (100) (-19.3 ± 0.7 nN). The smallest adhesive forces were generated between APTES-functionalized cantilevers and the hematite (001) surface (-6.2 ± 0.2 nN). Intermediate forces were measured on the magnetite (111) surface (-10.3 ± 0.2 nN). An analysis of variance indicated a significant difference between the adhesive forces generated between the functionalized cantilever and the three surfaces (F2,171 = 501.29, p < 0.0005). Fisher post-test comparisons indicated significant (α = 95%) differences between all three surfaces.
Shewanella immobilized at the cantilever surface
Cantilevers to which cells were attached displayed distinctly different interaction with the iron oxide surfaces than the APTES-functionalized cantilevers alone (Fig. 2). On approach, the attractive interactions between the APTES-functionalized cantilevers and the three mineral faces are greater than those between the mineral faces and cantilevers with immobilized cells. On both magnetite surfaces the net effect of the cells is to lessen the attractive regime so that small repulsive forces are measurable at very short distances of separation. Greatest repulsive force is observed on the magnetite (111) surface with less repulsion observed on the magnetite (100). The bacterium-hematite (001) system, in contrast, exhibits no repulsive maximum upon approach, but the attractive regime is somewhat reduced in the presence of cells compared to forces measured using the ATPES functionalized cantilever. It is important to note that due to the size of these cells and the orientation of the cantilever, it is possible that the forces measured on approach are not due to the cells alone. The differences measured using functionalized cantilevers and cantilevers with attached cells however, are indeed due to cell-mineral interactions and not due to APTES-mineral interactions.
Interfacial forces upon approach
The mean (± the 95% confidence interval of the mean) forces generated when the individual cantilevers and iron surfaces make contact for each system were -0.16 ± 0.02 nN for the bacterium-magnetite (100) system, -0.03 ± 0.003 nN for the bacterium-magnetite (111) system and -0.40 ± 0.02 nN for the bacterium-hematite (001) system. Analysis of variance of the measured forces upon approach indicated a significant effect of both the cantilever (F2,2021 = 200.65;p < 0.0005) and surface (F2,2021= 400.20 ;p < 0.0005) variables. There was also a significant interaction term (F4,2021= l20.30;p < 0.0005). Upon inspection of the data for individual cells, this interaction term was found to arise from the fact that one of the three cell-functionalized cantilevers did not exhibit as great a force on the magnetite (111) face as either of the other two cantilevers. In every other respect, relative forces measured were consistent with the other two cantilevers. Pairwise comparisons between the individual surfaces indicated a significant difference between the two magnetite faces (t = 5.58;p < 0.0005) and between the magnetite (100) and hematite (001) faces (t = 12.93;p < 0.0005).
Interfacial forces upon retraction
Mean forces of adhesion (± 95% Bonferroni confidence interval of the mean) for each cantilever-mineral combination are shown in Fig. 3. Post-ANOVA Bonferroni comparisons of the mean forces generated upon retraction between APTES-functionalized cantilevers to which no cells were attached, and cell-functionalized cantilevers indicated a maximum, significant difference (Δ) of 17.3 nN (t = 92.1;p < 0.0005) for the magnetite (100) surface, for the magnetite (111) surface Δ = 9.3 nN (t = 67.4;p < 0.0005) and the least difference between the two cantilever treatments is observed on hematite (001) (Δ = 1.9 nN, t = 8.97;p < 0.0005).
Despite expected differences between cantilevers (which include the number and position of attached cells as well as potential metabolic differences between those cells) there is a consistent trend in the data collected with different cantilevers on the three mineral faces. Bonferroni 95% confidence intervals suggest that for all cantilevers, significant differences are observed between the three mineral faces with the exception of the two magnetite faces measured with the third cantilever. Despite this, greatest forces of adhesion are consistently observed on the (001) hematite face, least force of adhesion is observed on the (111) magnetite face. The mean forces generated by each system across the three cantilevers upon retraction were -2.0 ± 0.04 nN for the bacterium-magnetite (100) system, -1.1 ± 0.02 nN for the bacterium-magnetite (111), and -4.3 ± 0.04 nN for the bacterium-hematite (001) system. As for the approach curves, significant effects were observed for both cantilever (F2,2021 = 190.67;p < 0.0005) and surface (F2,2021 = 4979.79;p < 0.0005). Again there was a significant interaction (F4,2021 = 181.68;p < 0.0005), attributed in part to a lack of significant difference in the forces of adhesion measured for the two magnetite surfaces with cantilever 3 (see Fig. 3). In every other respect adhesion forces measured with cantilever 3 were consistent with the other two cantilevers. Pairwise comparisons between the means across the three cantilevers for individual surfaces indicated a significant difference between the two magnetite faces (t = 8.13;p < 0.0005), between the magnetite (100) and hematite (001) faces (t = 18.30;p < 0.0005) and between (111) magnetite and (001) hematite (t = 13.47;p < 0.0005).
In anaerobic environments, attachment to an iron oxide surface represents a significant event in the life history of iron reducing bacteria. Metabolism may be significantly impaired if the cell remains unattached or attaches to mineral surfaces lacking in Fe(III). Our limited knowledge of the cell surface of iron reducing bacteria such as Shewanella demonstrates properties suggesting intimate association with mineral surfaces is beneficial: lipopolysaccharides (LPS) of S. oneidensis MR-1 lack a polysaccharidic O-antigen side chain,[29, 30] and metal-reductases are positioned in the outer membrane. [31–33] The presence of O-antigen can significantly affect cell adhesion by masking membrane-associated functional groups;[34, 35] cells lacking O-antigen are better able to attach to surfaces possibly due to an increased exposure of the lipid moiety, thereby facilitating hydrophobic interactions[27, 35, 36] which is consistent with the implication of hydrophobicity in the attachment of S. algae to iron oxides. Positioning of metal-reductases in the outer membrane would allow the transfer of electrons from the inner membrane across the periplasm and then across the outer membrane to insoluble Fe(III) as the terminal electron acceptor. Electrostatic interactions have also been implicated in cell interactions with metals.[37, 38] At circum-neutral pH these are dominated by COO- groups (pKa ≈ 5) possibly associated with the LPS, but also with proteins.
We present data indicating that adhesive forces generated between Shewanella oneidensis cells and iron oxides reflect substratum mineralogy. Although we cannot wholly discount the possibility of the APTES coating contributing to the observed cell-derived forces, greatest forces of adhesion are observed between cells and a hematite (001) surface; differences are also observed between magnetite faces with the (111) face supporting greater adhesive forces than a (100) face. This series in adhesive force is consistent with previous observations of cell accumulation at the mineral faces where maximum cell densities are observed on hematite (001). Also, relatively more daughter cells are released from the two magnetite surfaces compared to hematite reflecting the reduced adhesive forces observed here. There is therefore compelling evidence to suggest that some, as yet unidentified, property of the mineral surface can influence not only adhesion/attachment but also growth and detachment of S. oneidensis cells. Predictions of the rate of electron transfer (ET) from OmcA, an outer membrane c-type cytochrome, to the respective mineral faces can be related to the observations of adhesive force: those surfaces to which ET is likely to be fastest, i.e., hematite (001), support the greatest force of adhesion and the greatest cell density.
Lower et al. suggest that Fe(III) at the surface of goethite may specifically increase adhesion of Shewanella compared to diaspore although this effect, increased cell attachment in the presence of surface associated iron, has itself previously been interpreted as the result of increased electrostatic interactions. Predicted ferric site density for the iron oxide faces considered here increases from 1.4 nm-2 on magnetite (100) to 4.2 nm-2 for hematite (001) with magnetite (111) having an intermediate density of 2.8 nm-2. Thus, ferric site density, and by extension surface charge, agree well with measurements of cell adhesion. The fact that we do not observe retraction curve features similar to those observed by Lower et al., on goethite also suggests that the Shewanella-iron oxide surface interaction measured in our experiments is not dominated by specific interactions inferred by Lower et al. It is pertinent to acknowledge at this point that there are a number of experimental differences between those described here and those described earlier by Lower et al.: cells were immobilized on a glass bead by Lower et al., although we do have more than a single cell immobilized on cantilever surfaces it is likely that the experimental surface areas differ when cells are immobilized at a flat, rather than a spherical surface; also we have employed single crystal faces in an attempt to minimize the effect of surface discontinuities upon the measured forces of adhesion and simple monotonic retraction curves are more typical of cell interactions with flat surfaces, including Escherichia coli D21 with variously functionalized glass cover slips and Burkholderia sp. with freshly cleaved muscovite. If sawtooth features exist in our retraction curves, it is possible they are masked by the large adhesive forces present in our system. It should be noted however that such sawtooth features are not observed in Lower et al. on diaspore surfaces. Finally, sawtooth features in retraction curves are observed only infrequently (no more than 10% of retraction curves display features) thus we may not have collected a sufficient number of retraction curves to observe this stochastic feature.
The exact mechanism by which dissimilatory metal reducing bacteria attach to iron oxide mineral surfaces remains elusive. It is clear however that differences in the force of cell adhesion of Shewanella oneidensis are observed dependent upon the presence of ferric iron at mineral surfaces as well as between different iron oxide crystal faces (data presented here). Circumstantial evidence suggests that both electrostatic and hydrophobic interactions are important factors in determining not only the magnitude of adhesion force, but also the attachment behavior and growth of cell populations. [10–12] It is not clear whether the apparent effect of ferric site density observed here operates via an exclusively electrostatic mechanism or whether some specific recognition of ferric iron is responsible. Since ferric reductases (in the form of cytochromes) are present in the outer membrane, it is tempting to describe cell attachment in terms of specific interactions (sensu Lower et al.), however this hypothesis remains to be thoroughly tested.
This research was supported by the Environmental Remediation Sciences Division (ERSD) of the Office of Biological and Environmental Research (OBER), U.S. Department of Energy, through Financial Assistance Grant No. DE-FC09-96-SR18546 to the University of Georgia Research Foundation. The authors are also grateful to ERSD for financial support through Grants Nos. DE-FG02-02ER15326 and DE-FG02-05ER64121, and to the National Science Foundation through Grant No. EAR 01-03053. A portion of the research described in this paper was performed at the W. R.Wiley Environmental Molecular Sciences Laboratory, a national scientific user facility also sponsored by OBER located at Pacific Northwest National Laboratory, operated for the Department of Energy by Battelle.
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